Python + R: gds

The gds flavour contains a full gds_py stack, as well as an entire R stack. This includes the following:

  • An R stack composed of a list of libraries designed to closely mirror that provided by the excellent rocker/geospatial project.
  • An R kernel for Jupyter Lab/Notebook, provided by the IRkernel project.
  • An interface to R from Python Jupyter notebooks, provided by rpy2 project.

R Libraries

A full list of Python libraries installed in the gds_py environment is available below:

`gds` R library list (click to expand)
 PackageVersionPriority
abindabind1.4-5NA
arealareal0.1.8NA
armarm1.13-1NA
arrowarrow9.0.0.20220828NA
askpassaskpass1.2.0NA
assertthatassertthat0.2.1NA
aws.s3aws.s30.3.21NA
aws.signatureaws.signature0.6.0NA
backportsbackports1.4.1NA
base64encbase64enc0.1-3NA
bayesplotbayesplot1.10.0NA
bayestestRbayestestR0.13.1NA
BHBH1.81.0-1NA
BiocManagerBiocManager1.30.22NA
BiocVersionBiocVersion3.17.1NA
bitbit4.0.5NA
bit64bit644.0.5NA
bitopsbitops1.0-7NA
blmeblme1.0-5NA
blobblob1.2.4NA
bookdownbookdown0.36NA
brewbrew1.0-8NA
bridgesamplingbridgesampling1.1-2NA
briobrio1.1.3NA
brmsbrms2.20.4NA
BrobdingnagBrobdingnag1.2-9NA
broombroom1.0.5NA
broom.mixedbroom.mixed0.2.9.4NA
bslibbslib0.5.1NA
cachemcachem1.0.8NA
callrcallr3.7.3NA
carcar3.1-2NA
carDatacarData3.0-5NA
caretcaret6.0-94NA
cellrangercellranger1.1.0NA
checkmatecheckmate2.2.0NA
classIntclassInt0.4-10NA
clicli3.6.1NA
cliprclipr0.8.0NA
clockclock0.7.0NA
codacoda0.19-4NA
colorspacecolorspace2.1-0NA
colourpickercolourpicker1.3.0NA
colourvaluescolourvalues0.3.9NA
commonmarkcommonmark1.9.0NA
confintrconfintr1.0.2NA
conflictedconflicted1.2.0NA
corrplotcorrplot0.92NA
cowplotcowplot1.1.1NA
cpp11cpp110.4.6NA
crayoncrayon1.5.2NA
credentialscredentials2.0.1NA
crosstalkcrosstalk1.2.0NA
crulcrul1.4.0NA
curlcurl5.1.0NA
data.tabledata.table1.14.8NA
datawizarddatawizard0.9.0NA
DBIDBI1.1.3NA
dbplyrdbplyr2.3.4NA
deldirdeldir1.0-9NA
dendextenddendextend1.17.1NA
descdesc1.4.2NA
devtoolsdevtools2.4.5NA
diagramdiagram1.6.5NA
dichromatdichromat2.0-0.1NA
diffobjdiffobj0.3.5NA
digestdigest0.6.33NA
distributionaldistributional0.3.2NA
dotCall64dotCall641.1-0NA
downlitdownlit0.4.3NA
dplyrdplyr1.1.3NA
DTDT0.30NA
dtplyrdtplyr1.3.1NA
duckdbduckdb0.9.1NA
dygraphsdygraphs1.1.1.6NA
e1071e10711.7-13NA
effectsizeeffectsize0.8.6NA
ellipseellipse0.5.0NA
ellipsisellipsis0.3.2NA
emmeansemmeans1.8.9NA
estimabilityestimability1.4.1NA
evaluateevaluate0.22NA
expmexpm0.999-7NA
factoextrafactoextra1.0.7NA
FactoMineRFactoMineR2.9NA
fansifansi1.0.5NA
farverfarver2.1.1NA
fastmapfastmap1.1.1NA
fastmatchfastmatch1.1-4NA
featherfeather0.3.5NA
flashClustflashClust1.01-2NA
FNNFNN1.1.3.2NA
fontawesomefontawesome0.5.2NA
forcatsforcats1.0.0NA
foreachforeach1.5.2NA
FormulaFormula1.2-5NA
FRKFRK2.2.0NA
fsfs1.6.3NA
fstfst0.9.8NA
fstcorefstcore0.9.14NA
furrrfurrr0.3.1NA
futurefuture1.33.0NA
future.applyfuture.apply1.11.0NA
garglegargle1.5.2NA
genericsgenerics0.1.3NA
geoarrowgeoarrow0.0.0.9000NA
geocompkggeocompkg2.2.1NA
geojsongeojson0.3.5NA
geojsoniogeojsonio0.11.3NA
geojsonsfgeojsonsf2.0.3NA
geometriesgeometries0.2.3NA
geoRgeoR1.9-2NA
geospheregeosphere1.5-18NA
gertgert2.0.0NA
ggcorrplotggcorrplot0.1.4.1NA
ggeffectsggeffects1.3.2NA
ggforceggforce0.4.1NA
ggformulaggformula0.10.4NA
ggfunggfun0.1.3NA
ggh4xggh4x0.2.6NA
gghighlightgghighlight0.4.0NA
ggimageggimage0.3.3NA
ggmapggmap3.0.2NA
ggplot2ggplot23.4.4NA
ggplotifyggplotify0.1.2NA
ggpmiscggpmisc0.5.4-1NA
ggppggpp0.5.4NA
ggpubrggpubr0.6.0NA
ggrepelggrepel0.9.4NA
ggridgesggridges0.5.4NA
ggsciggsci3.0.0NA
ggseqplotggseqplot0.8.3NA
ggsignifggsignif0.6.4NA
ggstanceggstance0.3.6NA
ggtextggtext0.1.2NA
ggthemesggthemes4.2.4NA
ghgh1.4.0NA
gitcredsgitcreds0.1.2NA
glmmTMBglmmTMB1.1.8NA
glmnetglmnet4.1-8NA
globalsglobals0.16.2NA
glueglue1.6.2NA
goftestgoftest1.2-3NA
googledrivegoogledrive2.1.1NA
googlePolylinesgooglePolylines0.8.4NA
googlesheets4googlesheets41.1.1NA
gowergower1.0.1NA
gridExtragridExtra2.3NA
gridGraphicsgridGraphics0.5-1NA
gridtextgridtext0.1.5NA
gstatgstat2.1-1NA
gtablegtable0.3.4NA
gtoolsgtools3.9.4NA
hardhathardhat1.3.0NA
havenhaven2.5.3NA
hdf5rhdf5r1.3.8NA
hexbinhexbin1.28.3NA
highrhighr0.10NA
HmiscHmisc5.1-1NA
hmshms1.1.3NA
htmlTablehtmlTable2.4.1NA
htmltoolshtmltools0.5.6.1NA
htmlwidgetshtmlwidgets1.6.2NA
httpcodehttpcode0.3.0NA
httpuvhttpuv1.6.11NA
httrhttr1.4.7NA
httr2httr20.2.3NA
idsids1.0.1NA
igraphigraph1.5.1NA
iniini0.3.1NA
inlineinline0.3.19NA
insightinsight0.19.6NA
intervalsintervals0.15.4NA
ipredipred0.9-14NA
IRdisplayIRdisplay1.1NA
IRkernelIRkernel1.3.2NA
isobandisoband0.2.7NA
ISOcodesISOcodes2022.09.29NA
iteratorsiterators1.0.14NA
janeaustenrjaneaustenr1.0.0NA
jpegjpeg0.1-10NA
jqrjqr1.3.1NA
jquerylibjquerylib0.1.4NA
jsonifyjsonify1.2.2NA
jsonlitejsonlite1.8.7NA
jtoolsjtools2.2.2NA
kableExtrakableExtra1.3.4NA
knitrknitr1.44NA
labelinglabeling0.4.3NA
labelledlabelled2.12.0NA
laterlater1.3.1NA
lavalava1.7.2.1NA
lazyevallazyeval0.2.2NA
ldalda1.4.2NA
leafemleafem0.2.3NA
leafletleaflet2.2.0NA
leaflet.providersleaflet.providers2.0.0NA
leafpopleafpop0.1.0NA
leafsyncleafsync0.1.0NA
leapsleaps3.1NA
LearnBayesLearnBayes2.15.1NA
lidRlidR4.0.4NA
lifecyclelifecycle1.0.3NA
listenvlistenv0.9.0NA
lme4lme41.1-34NA
lmodel2lmodel21.7-3NA
lmtestlmtest0.9-40NA
looloo2.6.0NA
lubridatelubridate1.9.3NA
lwgeomlwgeom0.2-13NA
magickmagick2.8.0NA
magrittrmagrittr2.0.3NA
mapboxapimapboxapi0.5.3NA
mapdatamapdata2.3.1NA
mapdeckmapdeck0.3.4NA
mapsmaps3.4.1NA
mapviewmapview2.11.2NA
markdownmarkdown1.11NA
MASSMASS7.3-60recommended
MatrixModelsMatrixModels0.5-2NA
matrixStatsmatrixStats1.0.0NA
memoisememoise2.0.1NA
merToolsmerTools0.6.1NA
MetricsMetrics0.1.4NA
mimemime0.12NA
miniUIminiUI0.1.1.1NA
minqaminqa1.2.6NA
ModelMetricsModelMetrics1.2.2.2NA
modelrmodelr0.1.11NA
modelsummarymodelsummary1.4.3NA
modeltoolsmodeltools0.2-23NA
mosaicCoremosaicCore0.9.2.1NA
multcompmultcomp1.4-25NA
multcompViewmultcompView0.1-9NA
munsellmunsell0.5.0NA
mvtnormmvtnorm1.2-3NA
nabornabor0.5.0NA
narrownarrow0.0.0.9000NA
ncdf4ncdf41.21NA
nleqslvnleqslv3.3.4NA
nlmenlme3.1-163recommended
nloptrnloptr2.0.3NA
NLPNLP0.2-1NA
numDerivnumDeriv2016.8-1.1NA
odod0.4.2NA
opensslopenssl2.1.1NA
panderpander0.6.5NA
parallellyparallelly1.36.0NA
parametersparameters0.21.2NA
patchworkpatchwork1.1.3NA
pbapplypbapply1.7-2NA
pbdZMQpbdZMQ0.3-10NA
pbkrtestpbkrtest0.5.2NA
performanceperformance0.10.5NA
permutepermute0.9-7NA
pillarpillar1.9.0NA
pkgbuildpkgbuild1.4.2NA
pkgconfigpkgconfig2.0.3NA
pkgdownpkgdown2.0.7NA
pkgloadpkgload1.3.3NA
plogrplogr0.2.0NA
plotlyplotly4.10.2NA
plotrixplotrix3.8-2NA
plyrplyr1.8.9NA
pngpng0.1-8NA
polyclippolyclip1.10-6NA
polynompolynom1.4-1NA
posteriorposterior1.4.1NA
praisepraise1.0.0NA
prettyunitsprettyunits1.2.0NA
pROCpROC1.18.4NA
processxprocessx3.8.2NA
prodlimprodlim2023.08.28NA
profvisprofvis0.3.8NA
progressprogress1.2.2NA
progressrprogressr0.14.0NA
proj4proj41.0-13NA
promisespromises1.2.1NA
protoliteprotolite2.3.0NA
proxyproxy0.4-27NA
psps1.7.5NA
purrrpurrr1.0.2NA
quadprogquadprog1.5-8NA
quantedaquanteda3.3.1NA
quantregquantreg5.97NA
QuickJSRQuickJSR1.0.7NA
R6R62.5.1NA
raggragg1.2.6NA
randomForestrandomForest4.7-1.1NA
rangerranger0.15.1NA
rapidjsonrrapidjsonr1.2.0NA
rappdirsrappdirs0.3.3NA
rasterraster3.6-26NA
rbibutilsrbibutils2.2.15NA
rcmdcheckrcmdcheck1.4.0NA
RColorBrewerRColorBrewer1.1-3NA
RcppRcpp1.0.11NA
RcppArmadilloRcppArmadillo0.12.6.4.0NA
RcppEigenRcppEigen0.3.3.9.3NA
RcppParallelRcppParallel5.1.7NA
RCurlRCurl1.98-1.12NA
RdpackRdpack2.5NA
readrreadr2.1.4NA
readxlreadxl1.4.3NA
recipesrecipes1.0.8NA
RedditExtractoRRedditExtractoR3.0.9NA
rematchrematch2.0.0NA
rematch2rematch22.1.2NA
remotesremotes2.4.2.1NA
reprrepr1.1.6NA
reprexreprex2.0.2NA
reshape2reshape21.4.4NA
rglrgl1.2.1NA
RgoogleMapsRgoogleMaps1.4.5.3NA
rhdf5rhdf52.44.0NA
rhdf5filtersrhdf5filters1.12.1NA
Rhdf5libRhdf5lib1.22.1NA
RJSONIORJSONIO1.3-1.8NA
rlangrlang1.1.1NA
rlasrlas1.6.3NA
RMariaDBRMariaDB1.3.0NA
rmarkdownrmarkdown2.25NA
roxygen2roxygen27.2.3NA
rpart.plotrpart.plot3.1.1NA
rpostgisrpostgis1.5.0NA
RPostgresRPostgres1.4.5NA
RPostgreSQLRPostgreSQL0.7-5NA
rprojrootrprojroot2.0.3NA
RSQLiteRSQLite2.3.1NA
rstanrstan2.32.3NA
rstantoolsrstantools2.3.1.1NA
rstatixrstatix0.7.2NA
rstudioapirstudioapi0.15.0NA
rtweetrtweet1.2.1NA
rversionsrversions2.1.2NA
rvestrvest1.0.3NA
s2s21.1.4NA
sandwichsandwich3.0-2NA
sasssass0.4.7NA
satellitesatellite1.0.4NA
scalesscales1.2.1NA
scatterplot3dscatterplot3d0.3-44NA
selectrselectr0.4-2NA
servrservr0.27NA
sessioninfosessioninfo1.2.2NA
sfsf1.0-14NA
sfarrowsfarrow0.4.1NA
sfheaderssfheaders0.4.3NA
sftimesftime0.2-0NA
shapeshape1.4.6NA
shinyshiny1.7.5.1NA
shinyjsshinyjs2.1.0NA
shinystanshinystan2.6.0NA
shinythemesshinythemes1.2.0NA
showtextshowtext0.9-6NA
showtextdbshowtextdb3.0NA
sjlabelledsjlabelled1.2.0NA
sjmiscsjmisc2.8.9NA
sjPlotsjPlot2.8.15NA
sjstatssjstats0.18.2NA
slamslam0.1-50NA
slippymathslippymath0.3.1NA
SnowballCSnowballC0.7.1NA
sourcetoolssourcetools0.1.7-1NA
spsp2.1-1NA
spacetimespacetime1.3-0NA
spamspam2.9-1NA
sparseinvsparseinv0.1.3NA
SparseMSparseM1.81NA
spatialregspatialreg1.2-9NA
spatialwidgetspatialwidget0.2.3NA
spatstatspatstat3.0-6NA
spatstat.dataspatstat.data3.0-1NA
spatstat.explorespatstat.explore3.2-3NA
spatstat.geomspatstat.geom3.2-5NA
spatstat.linnetspatstat.linnet3.1-1NA
spatstat.modelspatstat.model3.2-6NA
spatstat.randomspatstat.random3.1-6NA
spatstat.sparsespatstat.sparse3.0-2NA
spatstat.utilsspatstat.utils3.0-3NA
spDataspData2.3.0NA
spDataLargespDataLarge2.1.1NA
spdepspdep1.2-8NA
spgwrspgwr0.6-36NA
splancssplancs2.01-44NA
splus2Rsplus2R1.3-3NA
SQUAREMSQUAREM2021.1NA
StanHeadersStanHeaders2.26.28NA
stargazerstargazer5.2.3NA
starsstars0.6-4NA
statmodstatmod1.5.0NA
stmstm1.3.6.1NA
stopwordsstopwords2.3NA
stplanrstplanr1.1.2NA
stringistringi1.7.12NA
stringrstringr1.5.0NA
svglitesvglite2.1.2NA
syssys3.4.2NA
sysfontssysfonts0.8.8NA
systemfontssystemfonts1.0.5NA
tablestables0.9.17NA
tensortensor1.5NA
tensorAtensorA0.36.2NA
terraterra1.7-55NA
testthattestthat3.2.0NA
textdatatextdata0.4.4NA
textshapingtextshaping0.3.7NA
TH.dataTH.data1.1-2NA
threejsthreejs0.3.3NA
tibbletibble3.2.1NA
tidycensustidycensus1.5NA
tidygeocodertidygeocoder1.0.5NA
tidyrtidyr1.3.0NA
tidyselecttidyselect1.2.0NA
tidytexttidytext0.4.1NA
tidyversetidyverse2.0.0NA
tigristigris2.0.4NA
timechangetimechange0.2.0NA
timeDatetimeDate4022.108NA
tinytextinytex0.48NA
tmtm0.7-11NA
tmaptmap3.3-4NA
tmaptoolstmaptools3.1-1NA
TMBTMB1.9.6NA
tokenizerstokenizers0.3.0NA
topicmodelstopicmodels0.2-14NA
TraMineRTraMineR2.2-8NA
triebeardtriebeard0.4.1NA
tuftetufte0.13NA
tweenrtweenr2.0.2NA
tzdbtzdb0.4.0NA
unitsunits0.8-4NA
urlcheckerurlchecker1.0.1NA
urltoolsurltools1.7.3NA
usethisusethis2.2.2NA
utf8utf81.2.3NA
uuiduuid1.1-1NA
V8V84.4.0NA
vadervader0.2.1NA
vctrsvctrs0.6.4NA
veganvegan2.6-4NA
viridisviridis0.6.4NA
viridisLiteviridisLite0.4.2NA
vroomvroom1.6.4NA
waldowaldo0.5.1NA
webshotwebshot0.5.5NA
whiskerwhisker0.4.1NA
widgetframewidgetframe0.3.1NA
withrwithr2.5.1NA
wkwk0.8.0NA
wpgpDownloadRwpgpDownloadR0.1.0NA
xfunxfun0.40NA
XMLXML3.99-0.14NA
xml2xml21.3.5NA
xopenxopen1.0.0NA
xtablextable1.8-4NA
xtsxts0.13.1NA
yamlyaml2.3.7NA
yulab.utilsyulab.utils0.1.0NA
zipzip2.3.0NA
zoozoo1.8-12NA
basebase4.3.1base
bootboot1.3-28recommended
classclass7.3-22recommended
clustercluster2.1.4recommended
codetoolscodetools0.2-19recommended
compilercompiler4.3.1base
datasetsdatasets4.3.1base
foreignforeign0.8-85recommended
graphicsgraphics4.3.1base
grDevicesgrDevices4.3.1base
gridgrid4.3.1base
KernSmoothKernSmooth2.23-22recommended
latticelattice0.21-9recommended
MASS.1MASS7.3-60recommended
MatrixMatrix1.6-1.1recommended
methodsmethods4.3.1base
mgcvmgcv1.9-0recommended
nlme.1nlme3.1-163recommended
nnetnnet7.3-19recommended
parallelparallel4.3.1base
rpartrpart4.1.19recommended
spatialspatial7.3-15recommended
splinessplines4.3.1base
statsstats4.3.1base
stats4stats44.3.1base
survivalsurvival3.5-7recommended
tcltktcltk4.3.1base
toolstools4.3.1base
utilsutils4.3.1base

Download table as .txt

Install

The Docker image can be downloaded with the following command:

docker pull darribas/gds:10.0